I tried what you suggested and it is still acting funky.
This is the log from where I try to zero X. It moves in the x direction when I zero the machine? I would have thought it should stay still at that point since it is the home position.
Y axis does the same thing?
10:34:00 AM: N39 G28 Y0.00 *110
< 10:34:00 AM: X:0.00 Y:0.00 Z:10.00 E:0.00 Count X:0 Y:0 Z:4000
< 10:34:00 AM: ok
Z response is this:
10:34:44 AM: N40 G28 Z0.000 *83
< 10:34:46 AM: echo:busy: processing
10:34:46 AM: Send emergency stop to printer. You may need to reset the printer for a restart!
Had to Emergency stop before it bottoms out the tool head. Any thoughts are helpful. I am using Repetier 1.1.0 if that makes a difference.
Thank you for the assistance. Hopefully it is something easy to figure out.